As you may know, we’ve been doing tips-of-the-week for three years now. We have completed around 150 little tidbit introductions to various resources*. At the end of the year we’ve established a sort of holiday tradition: we are doing a summary post to collect them all. If you have missed any of them it’s a [...]
The PSI-Nature Structural Genomics Knowledgebase (SGKB) that we’ve posted on before has been rebranded to now be named the PSI-Nature Structural Biology Knowledgebase (SBKB), provided to you by the Protein Structure Initiative (PSI). The new branding just rolled out yesterday, along with the September issue of all the features, and a reorganized left navigation area [...]
Last January I did a tip that featured the monthly Structural Genomics Update, which is essentially a newsletter and article collection from PSI Structural Genomics Knowledgebase (SGKB). However, the update is just one aspect of what SGKB offers. In today’s tip I want to feature the wonderfully efficient ways that Structural Genomics Knowledgebase provides you [...]
I’d like to point out the new NCBI Education page. There is a lot there that you might want to check out. NCBI will be, starting this fall, offering a series of two-day training courses they are calling Discovery Workshops. Two years ago they ended the NCBI Field Guide workshops, so this seems to be [...]
I noticed today that the Protein Structure Initiative has released an updated version of their Structural Genomics Knowledgebase. I have been looking forward to the release of these features since I got to explore them at their beta site while making our introductory tutorial on the resource. As I’ve blogged about before, I like this [...]
We know there are a number of different ways that scientists and students become familiar with genomics software. Some of it comes from the traditional publication routes–like the very handy NAR Database issue. Or like the Current Protocols papers we’ve done recently. We have these online tutorials that people use in various ways: some [...]
We recently announced a free tutorial (sponsored by PSI) on the Structural Genomics Knowledgebase (SGKB). I thought it might be of interest to our readers. You can access the free tutorial (approx. a 1hr movie, slides, handouts and exercises) here. We will also soon announce a free tutorial on the Protein Database (PDB), but you [...]
Free tutorial and training materials available for the Structural Genomics Knowledgebase bionformatics resource Working with OpenHelix to provide online training materials and increased visibility is an effective way to add to our efforts Bellevue, WA (PRWEB) March 18, 2010 — The Structural Genomics Knowledgebase(SGKB), a one-stop shop for information about proteins hosted at Rutgers University, has [...]
In today’s tip I’d like to show you the monthly Structural Genomics Update from the Protein Structure Initiative Structural Genomics Knowledgebase or PSI SGKB. Some of you may not be aware of the PSI SGKB, but it is a resource related to the RCSB PDB resource, which is very well known. We are currently creating [...]
RCSB has put goether a PDB Comparison Tool Widget . I put in 2K9G and 1ZLM, two SH3 domains. Used chain A for both and blast2seq as comparison algorithm (there are several choices), and these are my results. I’m not promising any biological significance to my choices and results, but the widget works nicely and simply. [...]
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