Tag Archives: phylogenies


Friday SNPpets

This week’s SNPpets include several new tools that I want to examine, including functional annotations in a couple of different ways. But other stuff includes designing DTC consumer products,  NLM’s future directions, a new Genomics subreddit, and stunning phylogenetics representations among other interesting reads.

Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment…

Tip of the Week: PhylomeDB

Gene phylogenies (as opposed to species phylogenies) can be very useful in determined gene function, history, orthology and paralogy predictions. PhylomeDB (link added!) is a database of gene phylogenies (or as they call them, Phylomes.. no end to the ‘omes is there? :). Currently there are over a dozen such phylomes from species like humans and yeast. The database allows you to obtain phylogenies of genes based on gene ID or BLAST, you can also get orthology predictions and alignments and more. Today’s tip is introducing you to the database.