标记档案: 个人基因组学

SNPpets_2

星期五SNPpets

This week we’ve got DNA in the gig economy and for sports fans (?), new software resources for virus and lipids, a handy collection of cancer genomics papers, microbiomes, biosecurity, 羊, pearl millet, and de-extinction. My favorite read this week, 虽然, was the mosquito and gene drive review paper. I am so on board to gene-drive those things….


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


And why I want gene drive mosquitoes:

SNPpets_2

星期五SNPpets

This week I left the “call to action” tweet at the top–you could vote for GenBank every day until the end of the competition. On other fronts, there’s big media on Venter’s DNA re-identification article–but there’s also significant blowback on that. A series of tweets in there gets to that. Otherwise, 更多的其他很酷的事情在周围可用的工具基因组学和周围的其他物种,,en,高兴地宣布,我们汇集CRISPR屏幕设计工具,,en,GUIDES,,en,现已发布,,en,pic.twitter.com/q3AYw9gTUW,,en,内维尔桑姜纳,,en,@nevillesanjana,,en,twitter.com/david_a_knowles/status/905203427931602944,,en,在所有的鹅基因组杂交测定基因组学和形态的历史与渗入,,en,鸟类学,,en,pic.twitter.com/cxDPXg1ZAe,,en,Ornithomics,,en,@ornithomics,,en,采用全基因组的个体的鉴定特征预测,,en,pic.twitter.com/JCKesjsAC2,,en,TeselaGen生物技术,,en,实际上,我在本文的作者,这是我离开挡拆的原因之一,,en,的来这里的目的是为了防止信息共享,,en,杰森·派珀,,en,@piper_jason,,en,预印本重塑生物学出版,,en,纸在PNAS,,en,通过揭穿,,en,在bioRxiv前,,en,twitter.com/clairemcwhite/status/905445932094939136,,en.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


通过https://twitter.com/david_a_knowles/status/905203427931602944

通过https://twitter.com/clairemcwhite/status/905445932094939136

 

SNPpets_2

星期五SNPpets

This week I left the “call to action” tweet at the top–你可以 vote for GenBank every day in August. And I know it’s September now, but I wanted to go and check–and they made it to the final four! So go vote for GenBank some more. Same link works fine. Other things this week: NYTimes shows more stories of people whose recreational genomics endeavors reveal family secrets. One of them is what’s in the reference genome? I don’t think the answer came up completely clearly, but it reminds me I want to look into that again. The breakthrough cancer diagnostics kit is approved. The girlfriend meme. And one more example of how far ahead agriculture is on genomics.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


This seems to be the answer:

SNPpets_2

星期五SNPpets

This week I left the “call to action” tweet at the top–you can vote for GenBank every day. But the other tweets are new this week. 第一, don’t fall for the fake grant scam. A catalog of museum samples (I love the data from sequencing projects using those), genotyping arrays vs. sequencing debate and a lot of new data that’s been released, fungi and é. 大肠杆菌 数据, a terrible DNA joke, and a terrible use of DNA testing to see how white a White Nationalist is.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


通过https://twitter.com/surt_lab/status/897187105495019520

SNPpets_2

星期五SNPpets

本周是美味,,en,苹果表观基因组和一个新的玉米总成,,en,及时为您北半球的夏季野餐,,en,海洋单细胞生物为你在沙滩上散步的思考,,en,维恩的回归,,en,并指导PCA地块,,en,一个非常酷的一组人的蛋白复合物,,en,Synbio工具,,en,这个星期我最喜欢的,,en. Apple epigenome and a new corn assembly, in time for your northern hemisphere summer picnics. Marine protists for you to think about during your walks on the beach. The return of the Venn, and a guide to PCA plots. A very cool set of human protein complexes. Synbio tools.

My favorite this week, 虽然, was the sequencing of different parts of a 200+ year old oak tree. That is a cool idea.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


通过https://twitter.com/CSHL/status/874282809761910784

通过https://twitter.com/nekton4plankton/status/874357230866317313

dtc_testing

一周的视频提示: Direct to Consumer Genetic Testing and Genetic Counselling

在OpenHelix, we remember the days when people didn’t even barely have documentation with their software when they put it out (yah, 我知道, it still varies). But outreach really is getting better. There are journals now that are also enforcing more reader-friendly ways to describe the research, with non-jargon summaries and some terrific visual aids.

越来越多, there are also videos associated with papers. I just came across this one, and thought it was a nice example of an important issue for non-scientists to access.

So this looks at direct-to-consumer (DTC) services available in Europe, but some of the same ones are available in the US. 当然, 在美国, as we muck around with health care again and what is/is not a pre-existing condition, the advice might be different. 叹息.

尖帽子:

参考:

Middleton, 答:, 门德斯, Á., 本杰明, ç. 米, & Howard, ħ. ç. (2017). Direct-to-consumer genetic testing: where and how does genetic counseling fit?. 个性化医疗, (14:3) , 页 249-257 , 分类号 10.2217/pme-2017-0001.

 

SNPpets_2

星期五SNPpets

This week’s SNPpets include items just posted to bioRxiv–which is lately where I see all the really intriguing tools. Including the awesomely-named “Clusterflock”. In a popular related item, someone responds to the 映泰 问题, “why are there errors in bioinformatics software?”. We have bat and bean genomics. And conch and lobster DNA. There’s at least 2 efforts to coordinate/wrangle human public genomes. 而更多的.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


SNPpets_2

星期五SNPpets

This week’s SNPpets include a popular slide deck that illustrates roads that go to bioinformatics; questions of what to do with your own genome data (assuming you aren’t a PhD in bioinformatics); fast identification of bacterial strains with StrainSeeker; and the epigenomic landscape of prokaryotes; the ancestors of cultivated peanuts sequenced; a cancer tool with proteomics coactivation pairs; very cool detailed visualization of tissue-level data that offers new insights; and microbiomes abound.


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


SNPpets_2

星期五SNPpets

This week’s SNPpets include quite a range of things. New species genomes projects (pineapple is out, bauhinia being crowdfunded). I dare you to resist a tool called “Time Curves“. The pre-print on over 60k protein coding human variations. Updates via FlyBase and discussed for QIIME. Best quip of the week: You can buy a DNA test on Amazon and it costs less than the textbook about it. A couple of items on bioinformatics pain. Some new solutions. 而更多的….


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…


 

SNPpets_2

星期五SNPpets

This week’s SNPpets include a lot of back-and-forth on the artist formerly known as personal genomics (now personalized medicine). We got the EU mucking up access, we have privacy issues unearthed, we have the cost of variant calling–and the uncounted cost of other analyses. But we also have the importance of genome sharing. There’s a follow-up story on the kid who was the “first child saved by genome sequencing”. Also some cool research on “essential” 人类基因. New databases or updates, as usual (dbGaPô is one I need to go deeper on). 而更多的….


SNPpets_2欢迎来到我们的链接集合星期五功能: SNPpets. 一周之内,我们遇到了很多链接和读取,我们认为很有趣, 但不要到一个博客帖子. 在这里,他们是您的享受…