Tag: haploview

What’s the Answer? Haploview and LD plots?

27 October, 2011 (08:30) | What's the Answer? | By: Trey

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. You [...]

Of Mormons and Mozambique: a cursory look @ 23andMe ancestry data

25 January, 2011 (15:10) | General Science | By: Trey

So, as a lot of people, I received my family’s 23andme results yesterday. Well, 3 of 4. Our youngest daughter’s spit apparently has little DNA, she had to spit again. Her results are to come later. As I mentioned in earlier posts, I wasn’t planning to be surprised of my own or my husband’s results. [...]

Tip of the Week: A year of tips III (first half of 2010)

22 December, 2010 (09:00) | General Science, Genomics Research, Genomics Resource News, Tip of the Week | By: Mary

As you may know, we’ve been doing tips-of-the-week for three years now. We have completed around 150 little tidbit introductions to various resources*. At the end of the year we’ve established a sort of holiday tradition: we are doing a summary post to collect them all. If you have missed any of them it’s a [...]

News bits: WikiGenes opportunity; HapMap data issue

29 November, 2010 (09:31) | Genomics News, Genomics Research, Genomics Resource News | By: Mary

Ok, I’m back from Thanksgiving and catching up on some emails and found a couple of news items I wanted to pass along. WikiGenes invitation to edit a Nature Genetics paper Here’s an interesting “experiment” I got notified about. You could potentially get authorship on this paper if you contribute to the development of this [...]

Tip of the Week: HapMap data in Haploview

10 March, 2010 (00:01) | Tip of the Week | By: Trey

HapMap has had a few minor updates to their browser, and importantly, new phase 3 data was released early last year (drafts of that data were released in 2008). Haploview, the downloaded software that allows the user to perform in depth LD and haplotype analysis, has been recently updated from version 4.1 to version 4.2. [...]

Tip of the Week: Visualizing Genotypes

30 January, 2008 (11:16) | Tip of the Week | By: Trey

And maybe it will help you visualize peace too . There are several sites and software programs (Haploview and GVS are two) that will help you do visual genotype, we are going to show you one here that is simple to use at SeattleSNPs. This tip will show you how to access SeattleSNPs VG2 software [...]

Autism: regional duplications and deletions?

9 January, 2008 (18:54) | Genomics News, Genomics Research | By: Mary

I was reading my local newspaper just now and spotted this intriguing information: Boston researchers find genetic trigger for 1 percent of autism ….The discovery, reported on-line in the New England Journal of Medicine this afternoon, stems from the most extensive genome scanning for autism done so far. The scans found that in just over [...]