12 October, 2012 (09:18) | SNPpets | By: Mary
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… RT @Massgenomics: Highlights of ENCODE transcriptome paper, which soundly refuted “Widespread RNA and DNA differences” paper [...]
Tags: Cytoscape, ENCODE, PDB
15 June, 2012 (08:44) | SNPpets | By: Mary
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… Wait, where is the $100 genome exactly? I must have missed a tweet somewhere RT @deanhendrix: [...]
Tags: Cytoscape, tfbs
30 May, 2012 (09:00) | Tip of the Week | By: Trey
Recently, the Broad Institute announced a new tool: GenomeSpace. When I first looked at it, admittedly a very cursory look, I wasn’t sure how it would be much different than an integrator of tools like Galaxy or GenePattern. Obviously that cursory look was wrong at first glance since both Galaxy and GenePattern are in their list of [...]
Tags: Cytoscape, GenePattern, GenomeSpace, Genomica, IGV, InSilicoDB, integration, Tip of the Week, UCSC Table Browser
1 September, 2011 (08:30) | What's the Answer? | By: Mary
BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of the community and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this [...]
Tags: Cytoscape, Cytoscape plugin, interactions
4 March, 2011 (09:18) | SNPpets | By: Jennifer
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… Ask a biologist site, intended primarily to serve grades preK-12, includes activities, stories, images & more [...]
Tags: Cytoscape, dreams, fly, kid science, NCBI, NIH RFI, ScienceOnline, sequence read archive, SRA, trace archive
16 November, 2010 (09:07) | Genomics Research, Genomics Resource News, Guest Posts | By: Mary
This next post in our continuing semi-regular Guest Post series is from Andrei Turinsky, one of the developers of iRefWeb. If you are a provider of a free, publicly available genomics tool, database or resource and would like to convey something to users on our guest post feature, please feel free to contact us at [...]
Tags: Cytoscape, interactions, iRefWeb, protein analysis
Comments: 3
29 October, 2010 (09:04) | SNPpets | By: Jennifer
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… A WordCloud Plugin for Cytoscape is now available from the Gary Bader lab. You can read [...]
Tags: Cytoscape, Cytoscape plugin, Duke research, r, WordCloud
26 October, 2010 (09:30) | Genomics Research, Genomics Resource News | By: Mary
Ok, I know they aren’t the most sexy graphics in biology–yes, you 3D protein structure geeks have that down. They are a pretty straight-forward representation of the numbers of items in a group and the overlap. But I have always found them really quickly helpful as I’m trying to assess results of lists of things [...]
Tags: Cytoscape, venn diagram
Comments: 10
8 October, 2010 (09:19) | SNPpets | By: Mary
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… A Cuban bioinformatics group announces updates to their Cytoscape plug-in. “A new update of SysBiomics database [...]
Tags: apple, Cytoscape, genomes
1 October, 2010 (09:00) | General Science, Genomics Resource News, SNPpets | By: Jennifer
Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… NIGMS Feedback Loop on “Maintaining “Legacy” Scientific Resources“, which I think is an important discussion & [...]
Tags: ASHG, careers, Cytoscape, expression, genomics, Sciflies, SpotXplore, twitter
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