Genomics Resource Tutorials
Providers of some of the most powerful and popular publicly available genomics and bionformatics resources, including those below, contract with OpenHelix to provide training for them.
Choose one of the resources below for free online tutorials and training materials (links take you off the OH Blog and to the OH site for the tutorial where you can access a 30-60 minute modular Flash movie, downloadable slides, exercises and other training resources.
Galaxy
sponsored by Center for Comparative Genomics and Bioinformatics at Pennsylvania State University
UCSC Genome Browser (Intro, Advanced and Associated Tools Topics)
sponsored by the University of California Santa Cruz Bioinformatics Group
VISTA Comparative Genomics Tools
sponsored by Lawrence Berkeley National Laboratory
PSI-Structural Biology Knowledgebase (PSI-SBKB)
sponsored by Protein Structure Initiative
RCSB Protein Data Bank (PDB)
sponsored by Research Collaboratory for Structural Bioinformatics (RCSB)
NIEHS SNPs
sponsored by NIEHS EGP
ENCODE
sponsored by the ENCODE Data Coordination center at UCSC
World Tour of Genome Resources
sponsored by OpenHelix
Gramene
sponsored by Gramene
See Other OpenHelix Tutorials.
OpenHelix provides tutorials and training materials on over 50 resources (a list that is growing rapidly) including genome browsers like Ensembl to interactions analysis tools like STRING. The tutorials are updated regularly. Permissions are granted by the resource provider for OH to create and deliver the training materials, but these tutorials are not financially sponsored by the provider. There is a subscription fee for access to all these additional tutorials.
Access All Tutorials Through a Subscription
Comments
Comment from Trey
Time January 17, 2008 at 12:56 PM
Alberto,
The links on this page will take you to our sponsored (and thus free) online tutorials for those resources. You have access to those without cost. OpenHelix also offers a suite of other online tutorials (over 50) on additional resources for a subscription. You can get access to those here.
Trey
Comment from Gilbert Burckart
Time January 21, 2008 at 11:14 PM
You might consider adding the program “The Future of Medicine: Pharmacogenomics” which was sponsored by the US Food and Drug Administration and the American College of Clinical Pharmacology (http://www.accp1.org). It has 13 sections, each with an Overview and a Depth Module, so is a complete course.
Comment from Mary
Time January 24, 2008 at 3:54 PM
Hi Gilbert–
Thanks for that, we’ll check it out. It looks interesting.
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Time February 8, 2008 at 11:14 AM
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Time February 20, 2008 at 7:45 PM
[...] Genomics Resource Tutorials [...]
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Time March 5, 2008 at 9:37 AM
[...] Genomics Resource Tutorials [...]
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[...] Genomics Resource Tutorials [...]
Comment from Xosé Fernández
Time April 25, 2008 at 1:02 PM
Alberto,
You can also find tutorials you might find interesting about Ensembl here:
http://www.ensembl.org/common/Workshops_Online
Similarly the European Bioinformatics Institute (EBI) has put some additional videos about Ensembl:
http://www.ebi.ac.uk/2can/evideos/index.html
Cheers,
Xose
Comment from pratim
Time May 20, 2008 at 5:14 AM
It is fantastic to come accross such resources.
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Time October 14, 2009 at 12:49 PM
[...] (OpenHelix does training on Galaxy and UCSC Genome Browser). [...]
Comment from Alberto Reyes
Time January 16, 2008 at 2:08 PM
I am very interested in having access to these courses online since our laboratory we are beginning the bioinformatics
Instituto Nacional de Pediatría, Laboratorio de Oncología Experimental, México D.F.
National Institute of Pediatrics, Experimental Oncology Laboratory, Mexico D.F.