- Video Tip of the Week: UCSC Genome Browser in the Cloud (GBIC)
- UCSC Genome Browser, default human genome changed
- UCSC replaces UCSC Genes with GENCODE as default gene set
- Phytozome notice, new and improved v10 coming soon [see update]
- Statistics for Biologists
- NCBI to hold two-day genomics hackathon in January
- So, speaking of research objects….
- Bioinformatics tools extracted from a typical mammalian genome project [supplement]
- Bioinformatics tools extracted from a typical mammalian genome project
- Video Tip of the Week: Biodalliance browser with HiSeq X-Ten data
- Public service announcement: NIH #GSPfuture meeting livestream [over]
- Video Tip of the Week: Nowomics, set up alert feeds for new data
- Happy Anniversary UCSC Genome Browser
- New tools at Reactome–check ‘em out
- Video Tip of the Week: New UCSC “stacked” wiggle track view
- BioMart news, and a shiny new look
- Heartbleed security issues, we’re ok
- New UCSC Genome Browser for the newest human genome assembly
- “We BLATted the Internet!”
- Video Tip of the Week: UCSC Track Hubs
- Antique (or maybe “classic”) UCSC Genome Browsers retired
- UCSC Genome Browser: updated slides + exercises
- Video Tip of the Week: Mobile-device enabled tutorial suites
- UCSC’s new Variant Annotation Integrator
- UCSC Genome Browser: New Euro server (affects custom tracks)
- UCSC Genome Browser outage Wednesday June 26 (brief)
- A new look for the UCSC Cancer Genomics Browser
- Video Tip of the Week: Enzyme Portal and User-Centered Design
- Protip: check the genome of your cell line. HeLa cells are “strikingly aberrant”
- Public Service Announcement: Reactome Community Survey
- BBC Radio4 covers the ENCODE “junk DNA” + “function” kerfuffle
- Spanking #ENCODE
- GMOD community survey–with a prize drawing
- UCSC campus power issues Dec 27-28. Need a mirror site?
- VectorBase’s shiny new site for nasty species
- 3D Virtual Cell workshop, live streaming Thursday/Friday. #vcell
- Fish on Friday
- Updated UCSC Genome Browser introduction materials
- ENCODE transitions
- ENCODE floods the news networks…
- Enjoying the 2012 NAR Web Server Issue & a Cup of Coffee
- Ooooh: Somebody’s got a new look….UCSC Genome Browser!
- ENCODE data in the UCSC Genome Browser, part deux
- Fresh data–metrics! From ENCODE
- Video Tip of the Week: Publications track in UCSC Genome Browser
- The Mouse Matrix has arrived…
- UCSC Genome Browser “Sessions” minor change
- Video Tip of the Week: FancyGene for quick accurate diagrams
- UPDATE: Galaxy servers are ̶d̶o̶w̶n̶ semi-up (they know). Other mirrors or sites
- Obituaries for bioinformatics tools. No, really. We’re doing it.
- Tool Tales: SciVee — Making Science Visible
- BioStar, moved
- The data isn’t in the papers anymore. Again.
- So. Cal. UCSC Genome Browser workshop, 3/29/12
- More ENCODE data releases
- A new mouse assembly at UCSC Genome Browser
- New ENCODE data is released
- RCSB PDB free webinar
- What’s in dbSNP? MassGenomics illustrates it
- New ENCODE track data available
- Video tip of the week: Functional Glycomics Gateway
- Saving your genome views: Ensembl (and UCSC Genome Browser, others)
- RapiData 2012, a course on Data Collection and Structure Solving
- News Updates Related to the PDB (Protein Data Bank), etc.
- NAR database issue (always a treasure trove)
- ENCODE webinar follow-up post: more questions?
- Service Announcement: EMBL-EBI Hinxton data centre offline for scheduled maintenance
- Customization of views at Ensembl
- Lung Genomics Portal
- dbSNP: no longer single….?
- GMOD community meeting announced
- Publishers + bioinformatics tools. Good idea.
- More mouse ENCODE data is flowing out!
- There’s a database for everything, even uber-operons
- Tip of the Week: Human Epigenomics Visualization Hub
- ENCODE RNA-Seq data standards–we’re gonna need ‘em
- Many Protein Resources Have Recently Announced Updates
- NAR Web Server issue is out
- Tip of the Week: Orphanet for Rare Disease information
- New feature, research articles, on OpenHelix site
- New OMIM displays at UCSC Genome Browser
- SNPTips update (1.1)
- Tip of the Week: MutaDATABASE, a centralized and standardized DNA variation database
- International Cancer Genome Consortium; interview with Tom Hudson
- On-site summer course by our friends at Bioinformatics.org
- The UCSC Genome Browser tweets!
- BioGPS is moving…to academia
- Alternate sequences in UCSC and Ensembl
- Friday SNPpets
- KEGG needs your help
- UCSC Genome Browser webinars coming up
- Tip of the Week: InterMine for mining “big data”
- Encyclopedia of DNA Elements (ENCODE): User’s Guide
- ENCODE usability survey is up: please share
- Tip of the Week: Dot Plots, Synteny at VISTA
- BioGPS v2.0 now available
- dbSNP 132 now at UCSC Genome Browser: important changes
- Friday SNPpets
- Tip of the Week: LAMHDI for animal models
- ENCODE Chromatin state data offers nice insights. Take this and run with it.
- Tip of the week: The Taverna Project for workflows
- Protein Structure Analysis – How Far We’ve Come!
- Brainz! Now with updates…Allen Brain Atlas
- “On the organization of #bioinformatics core services…”
- Social Computing for Scientists: Building collaborative e-Laboratories
- Tip of the Week: World Tour of Genomics Resources
- See Clint’s (updated) genome.
- I ♥ checklists: this one for Galaxy installs
- Changes to DGV display standards (and yay standards!)
- Reminder on Upcoming Galaxy & GMOD Meetings – Deadlines Approaching
- UCSC Preview Browser server, and Mouse TFBS data
- Galaxy community meeting in May
- modENCODE: the data bonanza ensues
- Tip of the Week: iRefWeb + protein interaction curation
- New navigation feature in UCSC Genome Browser
- Have some NGS SAM/BAM files? get a GUI interface
- New to me old news: Dryad data repository
- Reactome Webinar coming up; Wed Feb 2
- NAR Database issue…get it while it’s hot!
- Friday SNPpets
- Tip of the Week: A year in tips III (last half of 2010)
- Friday SNPpets
- Tip of the Week: A year of tips III (first half of 2010)
- 23andMe Scan: what I plan to find out
- Tip of the Week: BioGPS for expression data and more
- GMOD 2011 Spring Trainings announced; applications available
- News bits: WikiGenes opportunity; HapMap data issue
- Tip of the Week: ENCODE data in the UCSC Genome Browser
- Guest Post: iRefWeb — Andrei Turinsky
- Hot hot hot–a new track search feature from UCSC
- The Phenoscape Project, upcoming webinar
- We interrupt this program for a word… about individual tutorial purchase
- Tip of the Week: VISTA Enhancer Browser
- New Reactome Release Announced Today
- New NCBI Image Database
- Oddest photo accompanying 1000 Genomes news
- Tip of the Week: iTOL, Interactive Tree of Life
- I ♥ Venns
- New databases and resources from NAR database issue
- 1000 Genomes tutorial at ASHG
- Like shooting catfish genomes in a barrel
- Tip of the Week: NCBI Epigenomics “Beyond the Genome”
- A biological wikis conference: NETTAB 2010
- Tip of the Week: BioExtract Server
- Community Annotation; Beyond Reference Genomes
- Friday SNPets
- News about the Integrated Microbial Genomes (IMG) resource
- Tip of the Week: PathCase for pathway data
- New survey to answer: could win an iPad
- Tip of the Week: Varietas. A plaid database.
- Data standards: your input requested
- New viewing options in the UCSC Genome Browser
- FYI – New version of GeneMANIA is now available
- Galaxy, a stride towards reproducible computational research
- SBKB – New Name, Same Great Resource + More!
- Scivee group
- Next-Generation Analysis Tools
- Cytoscape Symposium videos available
- Friday SNPpets
- Get Your Abstract In for Biocuration2010
- Guest Post: SNAP — Andrew Johnson
- Tip of the Week: BioCatalogue for finding web services
- Galaxy Developer Conference slides available
- Tip of the Week: Database of mouse databases
- Guest Post: WAVe – Pedro Lopes
- Galaxy Developer conference tweets
- Tip of the Week: Chromhome, for karyotype level comparative genomics
- I can haz outreach? Nobody speaks for the end users.
- We’re all Neanderthal now, and I can analyze that…
- Friday SNPpets
- Textpresso for Mouse now available
- Guest Post: CoGe, The Suite for Comparative Genomics – Eric Lyons
- OMIM’s look has been updated, streamlined URL
- Personal Genomics, clinical assessment and online resources
- Tip of the Week: International Cancer Genome Consortium
- Choosing a genome browser for your organism…
- Genomics resource training scholarship, sponsored by Gramene and OpenHelix
- Phenotype resources and databases
- Cytoscape releases v2.7
- Amen.
- Tip of the Week: MitoCheck, a human functional genomics database
- PSI SGKB v2.0 has been released!
- Cerebellar Development Transcriptome Database
- The elephant genome browser arrives.
- Quick note: SGKB and PDB tutorials
- FYI: NCBI Has Officially Announced New dbVar Resource
- Come to the carnival….
- Video Tip of the Week: Caleydo for gene expression and pathway visualization
- Guest Post: CHOP’s new tool, CNV Workshop – Xiaowu Gai
- Just an FYI: RCSB PDB has announced the release of our free PDB tutorial
- New “gene” box search at UCSC Genome Browser
- Tip of the Week: uBIO federated taxonomic search
- Guest Post: New at VISTA- Inna Dubchak
- Create GMOD components? Need a logo?
- VISTA, genome comparison resource
- Get to know Galaxy
- Official GBrowse 2.0 launch announced
- Tip of the Week: WebGBrowse, now v2.0
- New custom track type at UCSC Genome Browser
- For good results, try several databases
- UCSC to delete some sessions/custom tracks
- Do You Have a Metagenome Sequence that Needs Taxonomic Analysis?
- Tip of the Week: iceLogo for conserved sequence display
- GMOD sessions at PAG
- New Potentials for the new year (and beyond)
- Another day, another genome…or 56…
- Cutest genome yet
- RT: UCSC Browser moves to new assembly this week
- One year of ENCODE data
- Warren DeLano Memorial Fund
- Liver proteome database resources
- (re)Funding Databases II
- Bad Gateway! at NCBI
- 10,000 Vertebrate Genomes
- R Genetics is back up
- UCSC, Galaxy, and R Genetics at ASHG
- GBrowse and Next Generation Sequencing Data
- Tip of the Week: CHOP CNV database
- Whole genome association studies
- Check this out – NHGRI’s Talking Glossary of Genetic Terms
- Does anybody have a Cre-whatever mouse…?
- (re)Funding Databases I
- Tip of the week: Sol Genomics Network
- BioGene: iPhone app for NCBI searches from MSKCC team
- Our Current Protocols paper on the UCSC Genome Browser is out!
- Widgets are cool
- (de)Funding Databases
- Transcription Start Sites, databases and tools
- Plants at ScienceBlogs! Woot!
- Ever Wish you Knew the Structure?
- GMOD summer school–homework!
- Tip of the Week: NCBI Makeover!
- Tip of the Week: Finding the right genomics resource
- Reactome wants to hear from you
- Peer Bork wins 2009 award
- Tip of the week: JBrowse, a game changer?
- New SNPs in the Mouse Phenome Database
- Video Tip of the Week: A Mouse for All Reasons
- Gene ID converters compared
- Tip of the Week: Acytelome, String and a new database
- A Tree is Barcoded in Brooklyn
- Tip of the Week: VirusMINT
- RetroDogs
- Tip of the Week: ENCODE data at UCSC
- Reactome new release, now with axon guidance!
- It's official – You Too Can Join the ISB!
- Important announcement from HapMap about data archiving
- Ok, say you get a genome. What next?
- Tip of the Week: DNAPlotter
- 1001 Genomes: plant researchers raise by 1
- Phytozome
- Tip of the Week: PhenX Toolkit for GWAS Phenotype and Exposure Studies
- GlycoSuiteDB back online
- New UCSC Genome Browser mirror in Australasia
- Bioinformatics resource tweets
- Curious about short read sequencing?
- Tip of the Week: Searching dbSNP for Human Variation
- DGV releases a pre-publication data set
- Got a genome? Need a browser?
- UCSC Genome Browser, new mirror in Europe
- Tip of the Week: UCSC Cancer Genomics Browser
- Gene expression and SNPs…very neat stuff
- I can haz brainz?
- Hi, I'm A-5661-2009
- Wanna code? Student opportunities
- The Deadline is This Friday for the Biocuration Conference!
- Tip of the Week: Rice Kinase Database
- Tip of the Week: TDR Targets Database
- GBrowse announces Summer School
- New Gene Ontology connections
- New GWA viewer
- Timbits from Canada
- Tip of the Week: Model Organism Database tutorials
- Paper compares interaction databases
- Tip of the Week: Visualizing GWAS with HapMap tools
- Tip of the Week: BioData Mining OpenAccess Journal
- TrEMBLing in the face of so many protein databases
- caMOD has a new release
- Tip of the Week: A year's worth of tips
- Nature Education: Genomic Data Resources
- IGV has a new release
- GXD wants your input
- Tree of Life on Tee Vee
- Genetic testing for Annie? Nah.
- Teaching and annotating at the same time
- Tip of the Week: Draw your own domains
- New Oyster assembly available
- Ensembl 51
- The Turkey Genome is on the way
- List of GWAS studies
- Tip of the Week: Collection of Proteomics Tools at ExPASy, including Radar
- UCSC and Galaxy at ASHG, giant training
- Gene Ontology on the move
- Looking for the Perfect Pedigree Software
- Mouse KOMP, all over the browsers
- How to pick a genome database platform
- Tip of the Week: cast a SPELL and find your genes!
- Tip of the Week: Green Pathways
- Ensembl Updating
- Treasure Hunts
- ENCODE wants your input on the data release policy
- Pathway drawing standards: SBGN notations
- MatchMiner is -down- UP
- Doggie DNA: not just for paternity anymore
- MIBBI? Maybe.
- IMG extends capabilities
- Animal Colony Management Software
- Don't blink, PubMed adds a feature
- Software bonanza…
- Genome-wide Association studies in Ensembl and UCSC Genome Browser
- Broad's newly released Genomics Data Viewer IGV
- Video Tip of the Week: modENCODE
- Database "openness"
- Open source molecular modeling–finally?
- Victor McKusick, "Father of Medical Genetics" 1921 – 2008
- Another Wiki, WikiPathways
- Genomics resource blog roundup
- Mito Much?
- Gene Wiki?
- JGI's Sequencing Plans for 2009
- Tip of the Week: Molecular INTeraction Database (MINT)
- ENCODE meeting: tons of data coming….
- Metagenomic Resources from The National Academy of Science
- AgBase requests input from microarray users
- Database of Databases
- PubMed citation sensor
- Bad hair day: now with photos!!
- BioNumbers
- Metagenomes in Nature
- So long SSAHA
- Tip of the Week: Phenotypic Data from the PhysioNet
- Catching up on Newsletters: Biocurator & SwissProt Updates
- Tip of the Week: Human Genome Structural Variation Viewer
- Quick intro to Viral Bioinformatics Resource Center
- Space-age training: mobile battery-powered workstations
- Tip of the Week: Introduction to ENCODE
- If you hadn’t noticed, it’s the Year of the Rats
- Happy DNA Day!
- Tip of the Week: Translating Gene IDs with MatchMiner
- Archaeal Genome Browser from UCSC
- We will celebrate DNA Day!
- Rats hit the small screen
- Wikification of Genbank
- GenBank's 25th Anniversary (Highlights)
- Liveblogging the GenBank 25th Anniversary II
- Liveblogging the GenBank 25th Anniversary
- Demise of the NCBI Field Guide
- Mouse cookbook, and scratch and sniff online books
- New relationships in GO (Gene Ontology) implemented
- jgi user meeting: live blogging
- Eh, enter your own damn data….
- Another day, another genome: red flour beetle
- MitoWheel
- Allen Brain Atlas, part duex
- Susie's genome available.
- Tip of the Week: Functional Abundance Profile Searching in Genomes
- FishBase and ReefBase
- HapMap Sudoku
- World Peas
- Bioinformatics Courses
- Tip of the Week: Free bioinformatics training materials
- Restriction sites in your sequences
- caMOD 2.4 released
- Rat Genome Database requests signatures: by Thursday
- Corn genome released
- Linking phenotypes and genotypes.
- A history of mice.
- WebLogo, fun tool to display sequence alignment
- Genetic Alliance
- TE insertions in genomes
- Tip of the Week: VISTA Enhancer Browser
- Web strolling finds
- Sponsored Genomics Resource Tutorials, available again
- Sponsored Genomics Resource Tutorials, available again
- How well do we know our genes?
- Pedigree drawing software
- SNPedia on the HapMap GBrowser
- Breaking: Celebrate 25 years of GenBank
- Omes and Omics. Oh, please stop the growth of the suffixome…?
- Tip of the Week: Data Downloading from Gene Expression Omnibus (GEO)
- Coat color genes
- McKusick gets another award; OMIM used to be index cards.
- KARG: Knowledgebase for Addiction Related Genes
- RSS feeds
- Weight gain and weight loss – a complicated story
- Tip of the week: SNPs on Protein Structure
- Oh, could you take a look at this? Browser sessions.
- UniProt's "Protein Spotlight" is a really good read!
- Tip of the Week: Amino acid sequences in the UCSC Genome Browser
- Finding Flies
- Speaking of the Bork lab…
- Metagenomics
- Eagerly awaiting the NAR database issue