Friday SNPpets

Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment…

  • Chromothripsis – new model for some cancers? From GenomeWeb Daily News. I’m interested in seeing follow up studies on this. [Jennifer]
  • A new data source added to the BioMart Central portal: “EMAGE, a database of in situ gene expression data in the mouse embryo, has been added to BioMart Central Portal. The EMAGE website can be found at http://www.emouseatlas.org/emage/ and the EMAGE BioMart server can be found at http://biomart.emouseatlas.org/” (via the Mart-dev mailing list) [Mary]
  • Another potential outlet for scientists wanting to get involved: the Global Knowledge Initiative who’s goal is [Jennifer]

    We build global knowledge partnerships between individuals and institutions of higher education and research. We help partners access the global knowledge, technology, and human resources needed to sustain growth and achieve prosperity for all.

  • From GenomeWeb – an announcement about MoDEL the ‘World’s Largest Protein Video Database’ – it is free for academic, not-for-profit use. I haven’t tried it at all, but it sounds like it might be cool. Let us know if you check it out! [Jennifer]
  • Announcement from the International Cancer Genome Consortium (where you can access the data using the cutting edge BioMart build…Hat tip to @bffo: Update on ICGC website with a simplified application process for controlled access data  #bioinformatics #cancer #genomics  http://icgc.org/ [Mary]
  • Another resource for protein-protein and drug-protein interactions: PROMISCUOUS [Jennifer]
  • There’s a new Announcement mailing list for BioMart, as it gets migrated from the former EBI location.  Announce and Users lists are available–if you were on them you probably got automatically migrated. If you want to sign up, see this note:  [mart-announce] New BioMart announce and users mailing lists.  Hmm, that’s not entirely helpful as it hides the addresses you need. They are: mart-dev@ebi.ac.uk becomes users@biomart.org and mart-announce@ebi.ac.uk becomes announce@biomart.org [Mary]
  • REViGO – a resource for reducing and visualizing Gene Ontology trees, described in this paper: Supek F et al. PLoS Genet 6(6): e1001004. [Jennifer]