Next-Generation Analysis Tools
MassGenomics points to a new structured programming framework for analyzing NGS data: A Foundation for Next-Generation Analysis Tools, the GATK (Genome Analysis Toolkit) and points to a few tools that use it.
While I’m at it, let me remind you of a NGS discussion group, GBrowse help to visualize NGS data and Galaxy has a NGS toolbox.

Comment from Yike Guo
Time September 1, 2010 at 9:31 AM
I have been working on NGS data analysis. Would be nice to hear more about the tools in this space….