Tip of the Week: A quick annotation of a genome

gatu tip thumbnailHey, say you’ve got a bacterial genome you just sequenced in your spare time (hey, the way technology is going, it’s not far off) and you need to do a quick and dirty annotation to get you started. Well, there are several tools out there to do that, predict genes, annotate regions, etc. I’d like to show you one in this tip that you might not have thought of but could be a useful tool to get started. It’s GATU (Genome Annotation Transfer Utility) at VBRC. As the name suggests, this doesn’t do any major gene predicting, what it does is take your genome and compare it to a closely related genome (the closer the better of course) and transfers all the annotation from the characterized genome. This is from a viral resource (VBRC) but it works just as well with bacterial genomes, something that might not have been obvious and puts another tool in your belt.

http://www.vbrc.org/