Tip of the Week: Genomicus and genome evolution
Today’s tip is on Genomicus. Genomicus is a great tool to visualize gene duplication, synteny and genome evolution. The search and display interfaces are quite straightforward, and there are lots of great features (viewing ancestral gene information, links out to resources, different views of phylogenies, etc) in the tool. This video is only a short introduction. You can delve deeper into the tool with the help and documentation, including an 11 minute video.
There is also a recent (advance access) paper in the journal “Bioinformatics” that will give you a lot more detail on how the database and tool works and what is there.
Muffato, M., Louis, A., Poisnel, C., & Roest Crollius, H. (2010). Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes Bioinformatics DOI: 10.1093/bioinformatics/btq079
You will also notice today the video is a SciVee embed. We are trying out a new way to post and share our tips. SciVee allows us to not only post on our blog, but for you to share the tip with others and also for scientists in the SciVee community to view the tips. This is only a test. We will be working with this for the next couple weeks to find the best way to post and share. Eventually, soon, we hope to share these on Facebook and Youtube also. If the video is not high enough quality for you (SciVee and other video sharing sites by necessity reduce size, you can try out the entire mpeg4 version a this link.