UCSC Genome Bioinformatics

주의 비디오 도움말: UCSC Genome Browser Exon-only Mode

팀에서 UCSC 게놈 브라우저 continues to update their resources and offer new ways to find and visualize features of interest to researchers. One of the newer features is the “multi-region” option. When it was first launched, I did a tip on how to use that, with some of the things that I noticed while I was testing it pre-launch. But now the folks at UCSC have their own video on the exon-only display that you might also find useful.

One of the things that is illustrated here is how the exon-only mode is handy to enhance your exploration of RNA-Seq data. It also uses a great 인코딩 data set as an example, and if you haven’t been using that collection it’s a good reminder of the kinds of things you can find in that resource still. And this extensive data set shows how much easier it is to look at different isoforms in the data in this new exon-only mode.

So have a look at this display option if you haven’t before, especially how it can help you to see transcript differences. 당신은에 익숙하지 않은 경우 인코딩 데이터 that’s being used, you can also see our training on that which will help you to understand how to use that data and the filtering features that are also used in this video.

특별주의: I have updated the UCSC Intro slides to include the new Gateway strategies as well. So download those slides for the latest look.


공개: UCSC Genome Browser tutorials are freely available because UCSC 스폰서 us to do training and outreach on the UCSC Genome Browser.

빠른 링크:

UCSC 게놈 브라우저: http://genome.ucsc.edu

UCSC Genome Browser training materials: http://openhelix.com/ucsc

인코딩: HTTP를://www.openhelix.com/ENCODE2

참고 문헌:

박차, 엠, 분기, 대답 :, Rosenbloom, 사장님, 래니 소장, B를, 스폰서, B를, Nejad, 추신, 리, B를, 배운, 사장님, Karolchik, 디, 힌릭스, 대답 :, Heitner, 미국, 하트, 기철, Haeussler, 엠, Guruvadoo, 실은, 후지타, 추신, Eisenhart, C., Diekhans, 엠, 클로슨, 반장님, 캐스퍼, 제이, 이발사, 샷, Haussler, 디, Kuhn, 기철, & 켄트, 에. (2016). UCSC의 게놈 브라우저베이스: 2016 업데이트 핵산 연구, 44 (D1) 간접 자원부: 10.1093/nar/gkv1275

인코딩 프로젝트 컨소시엄 (2012). 인간 게놈의 DNA 요​​소의 통합 백과 사전 자연, 489 (7414), 57-74 간접 자원부: 10.1038/nature11247