UCSC Genome Bioinformatics

Vídeo Consejo de la semana: UCSC Genome Browser Exon modo de sólo,en

El equipo de UCSC Genome Browser continues to update their resources and offer new ways to find and visualize features of interest to researchers. One of the newer features is the “multi-region” option. When it was first launched, I did a tip on how to use that, with some of the things that I noticed while I was testing it pre-launch. But now the folks at UCSC have their own video on the exon-only display that you might also find useful.

One of the things that is illustrated here is how the exon-only mode is handy to enhance your exploration of RNA-Seq data. It also uses a great CODIFICAR data set as an example, and if you haven’t been using that collection it’s a good reminder of the kinds of things you can find in that resource still. And this extensive data set shows how much easier it is to look at different isoforms in the data in this new exon-only mode.

So have a look at this display option if you haven’t before, especially how it can help you to see transcript differences. Si usted no está familiarizado con el Codifica los datos that’s being used, you can also see our training on that which will help you to understand how to use that data and the filtering features that are also used in this video.

Nota especial: I have updated the UCSC Intro slides to include the new Gateway strategies as well. So download those slides for the latest look.


Revelación: UCSC Genome Browser tutorials are freely available because UCSC patrocinadores us to do training and outreach on the UCSC Genome Browser.

Enlaces rápidos:

UCSC Genome Browser: http://genome.ucsc.edu

UCSC Genome Browser training materials: http://openhelix.com/ucsc

CODIFICAR: http://www.openhelix.com/ENCODE2


Espolón, M., Rama, A., Rosenbloom, K., Raney, B., Patrocinadores, B., Nejad, P., Sotavento, B., Aprendido, K., Karolchik, D., Hinrichs, A., Heitner, S., Duro, R., Haeussler, M., Guruvadoo, L., Fujita, P., Eisenhart, C., Diekhans, M., Clawson, H., Casper, J., Peluquero, G., Haussler, D., Kuhn, R., & Kent, En. (2016). La UCSC Genome Browser base de datos: 2016 actualización Nucleic Acids Research, 44 (D1) DOI: 10.1093/nar/gkv1275

El proyecto ENCODE Consorcio (2012). Una enciclopedia de elementos de ADN integrado en el genoma humano Naturaleza, 489 (7414), 57-74 DOI: 10.1038/nature11247