What’s the Answer? (Docker, actually…)

Biostars is a site for asking, answering and discussing bioinformatics questions and issues. We are members of the Biostars_logo community and find it very useful. Often questions and answers arise at Biostars that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those items or discussions here in this thread. You can ask questions in this thread, or you can always join in at Biostars.

In kind of an amusing pairing to this weeks Tip-of-the-Week on Docker, I was looking out for good questions/discussions at Biostar when I came across this one. The discussion opens with the idea of curating a bunch of “efficient” bioinformatics programs. This is a worthy exercise in time and resources. The conversation flows around then to include Docker, but also to note that Docker isn’t the right thing in every case potentially. So have a look  at how the idea percolated around–a good demonstration of crowdsourcing something useful for the community.

News: Pandora’s Toolbox – a collection of bioinformatics programs

Hello everyone,

I am developing a toolbox with collection of source codes of efficient bioinformatics programs.

They are available under the condition that you cite the individual authors and not Pandora’s toolbox.

My goal is to develop additional code so that we can mix and match them to solve various problems efficiently.

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github page -
https://github.com/homologus/Pandoras-Toolbox/

Blog posts -
Introducing ‘Pandora’s Toolbox’ and ‘Pandora’s Modules’
http://www.homolog.us/blogs/blog/2015/01/05/introducing-pandoras-toolbox-and-pandoras-modules/

An Update on Pandora’s Toolbox
http://www.homolog.us/blogs/blog/2015/01/08/an-update-on-pandoras-toolbox/
The following programs are currently included in the collection.

[list of stuff in there, go have a look over there for that set]

ugly.betty77

So, in short, more ideas for using Docker in the genomics software community. Jess’ sayin. And a nice coincidence for my blogging this week.