NCBI to hold two-day genomics hackathon in January

Because this came to my email on the Wednesday before the holiday, it seemed to me that some people might miss it who might like to attend. So I just wanted to boost the signal a bit by re-posting it. It came from the NCBI Announcement mailing list if you want to see the whole thing, I’m excerpting just some of it here. It has an application piece, FYI.

From January 5th to 7th, NCBI will host a genomics hackathon focusing on advanced bioinformatics analysis of next generation sequencing data. This event is for students, postdocs and investigators already engaged in the use of pipelines for genomic analyses from next generation sequencing data. Working groups of 5-6 individuals will be formed for DNA-Seq/multiomics, RNA-Seq, metagenomics and Epigenomics. These groups will build pipelines to analyze large datasets within a cloud infrastructure.

After a basic organizational session, teams will spend 2.5 days analyzing a challenging set of scientific problems related to a group of datasets. Students will analyze and combine datasets in order to work on these problems. This course will take place on the NIH main campus in Bethesda, Maryland.

Datasets will come from the public repositories housed at NCBI. During the course, students will have an opportunity to include other datasets and tools for analysis. Please note, if you use your own data during the course, we ask that you submit it to a public database within six months of the end of the event.

All pipelines and other scripts, software and programs generated in this course will be added to a public GitHub repository designed for that purpose. A manuscript outlining the design of the hackathon and descripting participant processes, products and scientific outcomes will be submitted to an appropriate journal.

To apply, complete the form linked below (approximately 10-15 minutes to complete). Applications are due December 1st by 5pm EST.

Participants will be selected from a pool of applicants; prior students will be given priority in the event of a tie. Accepted applicants will be notified on December 10th by 9am EST, and have until December 12th at noon to confirm their participation. Please include a monitored email address, in case there are follow-up questions.

[some stuff removed here, with requirements, pre-reqs, and some other details on the actual event stuff. See full version here.]

* Genomics hackathon application form:

Hack away.