What’s the answer? (non-model org TFs)

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. You can ask questions in this thread, or you can always join in at BioStar.

This week’s question highlights another issue with transcription factor binding site data. Increasingly people are seeking out this data, and this time it’s not for human or a well-studied model organism. As we broaden out with more species sequence data, this will also be another big need.

This week’s question: List of TF and TFBS from a non-model species

Hi,

How can I find the TF and TFBS from a non-model species (in my case the cow). Maybe is it possible to infer them with the human TF and TFBS ? My goal is to detect the TF from differentially expressed genes. and maybe the differentially expressed TF regulating differentially genes.

Other related question : how to know which gene encode a TF ?

Thanks a lot,

N.

Nicobxl

Again, I found a TF resource that was new to me, so I appreciated the answers. Check them out.