New ENCODE data is released
Just got the notices of some more data flowing into the UCSC Genome Browser and the ENCODE project tracks. There were two separate emails which I’ll trim here, but will link to the original so you can get more details from the mailing list items.
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Mouse ENCODE data releases: PSU TFBS
Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
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This track shows occupancy of genomic DNA by 5 transcription factors
(CTCF, GATA1, GATA2, PAX5, TAL1) and Pol2 as determined by ChIP-seq in 6
erythroid and other blood cell types (CH12, MEL, G1E, megakaryocyte,
erythroblast, G1E).
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
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Replication Timing by Repli-seq from ENCODE/University of Washington
This track shows genome-wide assessment of DNA replication timing in 15
cell lines as identified by the sequencing-based “Repli-seq” method.
Replication timing is known to be an important feature for epigenetic
control of gene expression that usually operates at a higher-order
level than at the level of specific genes.
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
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RNA-seq from ENCODE/HAIB
This track displays RNA-seq alignments and graphs of signal enrichment
for 9 cell lines, in various treatment protocols. Estimates of
transcript abundance are provided for download.
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibRnaSeq
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If you want to learn more about using the UCSC Genome Browser and the ENCODE data, check out the freely available tutorials sponsored by the UCSC teams:
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