Possible What’s the Answer? (predicting protease sites)

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. You can ask questions in this thread, or you can always join in at BioStar.

This week’s highlighted question:

What is the best website for predicting potential protease sites?

I have tried PeptideCutter on ExPASy but there is just a data deluge. I was curious if there was a better resource that would provide a clearer picture.


At this time there is no selected answer–but it seems there should be something like this akin to restriction enzyme tools. Does anyone know of a tool that does this? Share your answers at the question, or if you don’t want to answer at BioStar I would be able to bring it over.