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	<title>The OpenHelix Blog &#187; ArrayExpress</title>
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		<title>Tip of the Week: Gene Expression Data by Condition at ArrayExpress</title>
		<link>http://blog.openhelix.eu/?p=561</link>
		<comments>http://blog.openhelix.eu/?p=561#comments</comments>
		<pubDate>Wed, 10 Sep 2008 07:43:34 +0000</pubDate>
		<dc:creator>Jennifer</dc:creator>
				<category><![CDATA[General Science]]></category>
		<category><![CDATA[Tip of the Week]]></category>
		<category><![CDATA[AE Atlas]]></category>
		<category><![CDATA[AE Warehouse]]></category>
		<category><![CDATA[ArrayExpress]]></category>
		<category><![CDATA[EBI]]></category>
		<category><![CDATA[European Bioinformatics Institute]]></category>
		<category><![CDATA[expression data]]></category>
		<category><![CDATA[Gene Expression]]></category>

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			<content:encoded><![CDATA[<p><a href="http://openhelix.com/downloads/jing/2008-09-09_AE_Atlas_tip.swf" title="ArrayExpress Atlas Tip"><img align="left" src="http://www.openhelix.com/blog/wp-content/uploads/2008/09/aeatlas_tip.thumbnail.jpg" alt="AE Atlas Tip" /></a>In today&#8217;s tip, I want to show you how to use a great looking beta tool that I just found at <a target="_blank" href="http://www.ebi.ac.uk/" title="EBI homepage">EBI&#8217;s</a> <a target="_blank" href="http://www.ebi.ac.uk/microarray-as/ae/" title="ArrayExpress homepage">ArrayExpress Gene Expression repository (AE)</a>. The tool&#8217;s name is the <a target="_blank" href="http://www.ebi.ac.uk/microarray-as/atlas/" title="ArrayExpress Atlas homepage">ArrayExpress Atlas</a>. You may have retrieved expression data from the <a target="_blank" href="http://www.ebi.ac.uk/microarray-as/aew/" title="AE Warehouse">ArrayExpress Warehouse</a>, which is a carefully curated collection of expression data. The Warehouse is a wonderful resource, and a great way to obtain expression data sets, but the information retrieved is organized by gene name and sample values. The ArrayExpress Atlas appears to be the next generation of the Warehouse and it provides gene expression data as a table, with genes corresponding to rows and experimental conditions corresponding to columns. The tool is easy to use, provides easy to interpret results, and looks like its capabilities are growing fast. Check out this <a href="http://openhelix.com/downloads/jing/2008-09-09_AE_Atlas_tip.swf" title="AE Atlas Tip">tip</a>, check out the <a target="_blank" href="http://arrayexpress-atlas.blogspot.com/" title="Atlas blog">Atlas blog spot</a>, check out the <a target="_blank" href="http://www.ebi.ac.uk/microarray-as/atlas/" title="AE Atlas homepage">tool</a>, and send any <a target="_blank" href="mailto:arrayexpress-atlas@ebi.ac.u" title="AE Atlas Feedback">feedback</a> for improving the tool to AE. </p>
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