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	<title>Comments on: Wikification of Genbank</title>
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	<link>http://blog.openhelix.eu/?p=275</link>
	<description>at OpenHelix</description>
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		<title>By: Gene Wiki? &#124; The OpenHelix Blog</title>
		<link>http://blog.openhelix.eu/?p=275&#038;cpage=1#comment-694</link>
		<dc:creator>Gene Wiki? &#124; The OpenHelix Blog</dc:creator>
		<pubDate>Mon, 07 Jul 2008 21:50:47 +0000</pubDate>
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		<description>[...] News Automatic Term Mapping ModifiedTitle SortCitation Sensor     Related Posts Wikification of GenbankWeb strolling findsSQL, SQL, SQLOpen Access [...]</description>
		<content:encoded><![CDATA[<p>[...] News Automatic Term Mapping ModifiedTitle SortCitation Sensor     Related Posts Wikification of GenbankWeb strolling findsSQL, SQL, SQLOpen Access [...]</p>
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		<title>By: Trey</title>
		<link>http://blog.openhelix.eu/?p=275&#038;cpage=1#comment-691</link>
		<dc:creator>Trey</dc:creator>
		<pubDate>Mon, 14 Apr 2008 16:06:58 +0000</pubDate>
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		<description>I understand, and actually agree, the ability to attach information to a record could be highly useful, both in the case of attaching proper/more detailed identification and gene structure problems in genbank.

In fact, in searching databases like Genbank, I find this one of the more frustrating aspects, finding a sequence or data and then spending an inordinate amount of time confirming that sequence (or not doing it and getting misleading data). I can see this could be very helpful.

I do see also the issue of moderation, even among scientific research communities, to insure the quality of the attached data.

It will be interesting to see how this develops over time.</description>
		<content:encoded><![CDATA[<p>I understand, and actually agree, the ability to attach information to a record could be highly useful, both in the case of attaching proper/more detailed identification and gene structure problems in genbank.</p>
<p>In fact, in searching databases like Genbank, I find this one of the more frustrating aspects, finding a sequence or data and then spending an inordinate amount of time confirming that sequence (or not doing it and getting misleading data). I can see this could be very helpful.</p>
<p>I do see also the issue of moderation, even among scientific research communities, to insure the quality of the attached data.</p>
<p>It will be interesting to see how this develops over time.</p>
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		<title>By: gsgs</title>
		<link>http://blog.openhelix.eu/?p=275&#038;cpage=1#comment-693</link>
		<dc:creator>gsgs</dc:creator>
		<pubDate>Mon, 14 Apr 2008 04:54:21 +0000</pubDate>
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		<description>just a webpage to list all these comments on sequences wiuld be fine. For each sequence there would be a link to discussion related to it and an improvement suggestion. Databases of &quot;improved&quot; sequences will be available. You chan choose individually which database to trust most</description>
		<content:encoded><![CDATA[<p>just a webpage to list all these comments on sequences wiuld be fine. For each sequence there would be a link to discussion related to it and an improvement suggestion. Databases of &#8220;improved&#8221; sequences will be available. You chan choose individually which database to trust most</p>
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		<title>By: Jason Stajich</title>
		<link>http://blog.openhelix.eu/?p=275&#038;cpage=1#comment-692</link>
		<dc:creator>Jason Stajich</dc:creator>
		<pubDate>Sun, 13 Apr 2008 01:22:48 +0000</pubDate>
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		<description>Well it doesn&#039;t have to be full wikification - I think that part is getting a little too much obsession.

If someone does an analysis (like builds a tree) on existing that shows that a) the species/genus is wrong b) the &quot;uncultured soil clone&quot; is actually a known species then it should be possible to attach this information to a record so that the next time someone does a BLAST search, etc they have a way of building on that knowledge.  The Letter to Science was primarily focused on attaching proper or more detailed species identification while Steven&#039;s opinion more on fixing gene structure problems in genbank (which is also a huge problem that also needs help).

The problem right now is there is no way to update the actual record (or attach a pointer to a corrected one) except if the original author submits the request OR they have turned that permission over to a proxy like all the yeast chromosome sequences have been been proxied to SGD to make the updates.</description>
		<content:encoded><![CDATA[<p>Well it doesn&#8217;t have to be full wikification &#8211; I think that part is getting a little too much obsession.</p>
<p>If someone does an analysis (like builds a tree) on existing that shows that a) the species/genus is wrong b) the &#8220;uncultured soil clone&#8221; is actually a known species then it should be possible to attach this information to a record so that the next time someone does a BLAST search, etc they have a way of building on that knowledge.  The Letter to Science was primarily focused on attaching proper or more detailed species identification while Steven&#8217;s opinion more on fixing gene structure problems in genbank (which is also a huge problem that also needs help).</p>
<p>The problem right now is there is no way to update the actual record (or attach a pointer to a corrected one) except if the original author submits the request OR they have turned that permission over to a proxy like all the yeast chromosome sequences have been been proxied to SGD to make the updates.</p>
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